STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
cce_3340Extracellular solute-binding protein, family 5. (578 aa)    
Predicted Functional Partners:
cce_0991
Permease protein of ABC transporter.
 
 
 0.924
cce_4492
OppC in a binding protein-dependent transport system.
 
 
 0.922
nifJ
Pyruvate oxidoreductase; Oxidoreductase required for the transfer of electrons from pyruvate to flavodoxin.
  
  
 0.859
cce_2297
Binding protein dependent transport systems inner membrane component.
 
 
 0.844
oppC
Peptide transport system permease protein.
 
 
 0.839
cce_0780
Permease protein of oligopeptide ABC transporter.
 
 
 0.819
cce_0124
Putative ABC transporter, oligopeptides.
 
 
 0.810
cce_1370
Putative extracellular solute-binding protein, family 3 precursor.
  
  
 0.609
cce_1530
ATP-binding protein of ABC transporter.
  
 0.584
cce_3634
ATP-binding protein of ABC transporter; Belongs to the ABC transporter superfamily.
 
 
 0.554
Your Current Organism:
Crocosphaera subtropica
NCBI taxonomy Id: 43989
Other names: C. subtropica ATCC 51142, Crocosphaera subtropica ATCC 51142, Cyanothece sp. ATCC 51142, Cyanothece sp. BH68, Cyanothece sp. BH68K
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