STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cce_3340Extracellular solute-binding protein, family 5. (578 aa)    
Predicted Functional Partners:
cce_0991
Permease protein of ABC transporter.
 
 
 0.884
cce_4492
OppC in a binding protein-dependent transport system.
 
 0.869
nifJ
Pyruvate oxidoreductase; Oxidoreductase required for the transfer of electrons from pyruvate to flavodoxin.
  
  
 0.852
cce_2297
Binding protein dependent transport systems inner membrane component.
 
 
 0.758
oppC
Peptide transport system permease protein.
 
 
 0.729
cce_0780
Permease protein of oligopeptide ABC transporter.
 
 
 0.719
cce_0124
Putative ABC transporter, oligopeptides.
 
 
 0.680
cce_1370
Putative extracellular solute-binding protein, family 3 precursor.
  
  
 0.613
glnH
Glutamine-binding protein of glutamine ABC transporter; Belongs to the bacterial solute-binding protein 3 family.
   
  
 0.559
cce_3342
Hypothetical protein.
       0.546
Your Current Organism:
Crocosphaera subtropica
NCBI taxonomy Id: 43989
Other names: C. subtropica ATCC 51142, Crocosphaera subtropica ATCC 51142, Cyanothece sp. ATCC 51142, Cyanothece sp. BH68, Cyanothece sp. BH68K
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.