STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cce_3352Unknown; Contains a coenzyme F420 hydrogenase/dehydrogenase beta subunit, N-terminal domain. (470 aa)    
Predicted Functional Partners:
hupL
[NiFe] uptake hydrogenase large subunit.
  
 
 0.889
hoxY
Hydrogenase small subunit.
  
 
 0.882
cce_3351
Glycosyl transferase, family 2.
 
     0.790
cce_3353
Unknown.
       0.787
cce_3354
Hypothetical protein.
       0.773
cce_3355
Hypothetical protein.
       0.773
cce_3356
CHP374-containing protein.
       0.705
cce_3228
Heterodisulfide reductase, subunit B.
 
 
 0.670
glsF
Ferredoxin-dependent glutamate synthase.
  
 
 0.665
cce_1660
Oxidoreductase alpha (molybdopterin) subunit; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
 
 
 0.664
Your Current Organism:
Crocosphaera subtropica
NCBI taxonomy Id: 43989
Other names: C. subtropica ATCC 51142, Crocosphaera subtropica ATCC 51142, Cyanothece sp. ATCC 51142, Cyanothece sp. BH68, Cyanothece sp. BH68K
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