STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cce_3407Sulfide-quinone reductase. (433 aa)    
Predicted Functional Partners:
sir
Ferredoxin-sulfite reductase; Belongs to the nitrite and sulfite reductase 4Fe-4S domain family.
     
 0.903
cce_0210
Cysteine synthase.
     
  0.900
cysK
Cysteine synthase A; Belongs to the cysteine synthase/cystathionine beta- synthase family.
     
  0.900
cce_3406
Putative YfcH-like cell division inhibitor.
  
    0.709
ctpB
Carboxyl-terminal protease; Belongs to the peptidase S41A family.
   
  
 0.619
hemN
Oxygen independent coprophorphyrinogen III oxidase 1; Belongs to the anaerobic coproporphyrinogen-III oxidase family.
  
    0.600
hoxF
NADH dehydrogenase I chain F.
      
 0.503
cce_3403
Hypothetical protein.
       0.489
cce_3404
Hypothetical protein.
       0.489
dnaB1
Replicative DNA helicase; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity. Belongs to the helicase family. DnaB subfamily.
       0.489
Your Current Organism:
Crocosphaera subtropica
NCBI taxonomy Id: 43989
Other names: C. subtropica ATCC 51142, Crocosphaera subtropica ATCC 51142, Cyanothece sp. ATCC 51142, Cyanothece sp. BH68, Cyanothece sp. BH68K
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