STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
cce_3409Hypothetical protein; Contains a Rhodanese-like domain. (128 aa)    
Predicted Functional Partners:
cce_3408
Unknown.
       0.718
cce_3077
AMP-dependent synthetase and ligase, probable acyl-CoA synthase.
   
 
 0.572
cce_1025
AMP-dependent synthetase and ligase/probable acyl-CoA synthase.
   
   0.558
cce_1028
AMP-dependent synthetase and ligase/probable acyl-CoA synthase.
   
   0.558
cce_1466
Probable AMP-dependent synthetase and ligase.
   
   0.558
cce_3758
AMP-dependent synthetase and ligase.
   
   0.558
petC2
Cytochrome b6-f complex Rieske iron-sulfur protein, plastoquinol--plastocyanin reductase; Component of the cytochrome b6-f complex, which mediates electron transfer between photosystem II (PSII) and photosystem I (PSI), cyclic electron flow around PSI, and state transitions.
     
 0.545
sodB
Superoxide dismutase; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family.
   
 
 0.523
cce_3470
Hypothetical protein; Contains a Rhodanese-like domain.
  
     0.500
ybeY
Hypothetical protein; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA.
    
   0.485
Your Current Organism:
Crocosphaera subtropica
NCBI taxonomy Id: 43989
Other names: C. subtropica ATCC 51142, Crocosphaera subtropica ATCC 51142, Cyanothece sp. ATCC 51142, Cyanothece sp. BH68, Cyanothece sp. BH68K
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.