STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
natAATP-binding protein of ABC transporter. (257 aa)    
Predicted Functional Partners:
cce_3156
Putative branched-chain amino acid ABC transporter permease protein; Belongs to the binding-protein-dependent transport system permease family.
 
 0.999
cce_2946
Branched-chain amino acid ABC transporter permease protein; Belongs to the binding-protein-dependent transport system permease family.
 
 0.997
natB
Probable ABC transporter periplasmic branched chain amino acid binding protein.
 
 
 0.988
cce_4521
ATP-binding protein of branched-chain amino acid ABC transporter.
 
 
0.980
cce_3012
Unknown; Contains an extracellular ligand-binding receptor domain.
 
  
 0.900
cce_2277
Unknown; Contains an extracellular ligand-binding receptor domain.
 
  
 0.895
cce_4628
Unknown; Contains an extracellular ligand-binding receptor domain.
 
  
 0.827
cce_3418
Probable extracellular solute-binding protein, family 1.
  
    0.634
cce_1036
Unknown.
  
  
 0.628
cce_2611
Hypothetical protein; Contains PAS, GGDEF, Response regulator receiver, and GAF domains.
  
    0.524
Your Current Organism:
Crocosphaera subtropica
NCBI taxonomy Id: 43989
Other names: C. subtropica ATCC 51142, Crocosphaera subtropica ATCC 51142, Cyanothece sp. ATCC 51142, Cyanothece sp. BH68, Cyanothece sp. BH68K
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