STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
cce_3418Probable extracellular solute-binding protein, family 1. (432 aa)    
Predicted Functional Partners:
cce_0748
Permease protein of sugar ABC transporter.
 
 0.992
cce_0286
Permease protein of sugar ABC transporter.
 
 0.990
cce_0942
Probable permease protein of sugar ABC transporter, membrane component.
 
 
 0.938
cce_0943
Probable permease protein of sugar ABC transporter, membrane component.
 
 
 0.927
cce_4082
Sugar ABC transporter ATP-binding protein; Belongs to the ABC transporter superfamily.
 
 
 0.921
cce_0276
ATP-binding protein of sugar ABC transportor; Belongs to the ABC transporter superfamily.
 
 
 0.884
natA
ATP-binding protein of ABC transporter.
  
    0.634
cce_2867
Unknown.
  
     0.619
cce_3147
Unknown; Contains a GTP-binding protein, HSR1-related domain.
  
     0.542
grxC2
Glutaredoxin; Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins.
      
 0.521
Your Current Organism:
Crocosphaera subtropica
NCBI taxonomy Id: 43989
Other names: C. subtropica ATCC 51142, Crocosphaera subtropica ATCC 51142, Cyanothece sp. ATCC 51142, Cyanothece sp. BH68, Cyanothece sp. BH68K
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