STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
cce_3428Hypothetical protein. (156 aa)    
Predicted Functional Partners:
cce_3429
Hypothetical protein; Contains Anti-Sigma-factor antagonist (STAS) and glycosyl transferase domains.
  
 
 0.956
cce_3320
Two-component response regulator.
 
 
 0.936
cce_3430
Unknown.
 
     0.834
cce_0470
Hypothetical protein; Contains an Anti-sigma factor antagonist domain; Belongs to the anti-sigma-factor antagonist family.
 
 
 0.826
cce_3321
Anti-sigma factor antagonist; Belongs to the anti-sigma-factor antagonist family.
 
 
 0.821
cce_0656
Two-component hybrid sensor and regulator.
  
  
 0.815
cce_4177
Hypothetical protein; Contains a GGDEF domain, Forkhead-associated domain, EAL domain, SMAD/FHA domain, and a PAS fold domain.
  
 
 0.808
cce_4651
Hypothetical protein; Contains an EAL signaling domain.
  
 
 0.808
cce_1801
Unknown; Contains an Anti-sigma factor antagonist domain; Belongs to the anti-sigma-factor antagonist family.
  
 
 0.791
cce_0970
Two-component transcription regulator.
  
  
 0.782
Your Current Organism:
Crocosphaera subtropica
NCBI taxonomy Id: 43989
Other names: C. subtropica ATCC 51142, Crocosphaera subtropica ATCC 51142, Cyanothece sp. ATCC 51142, Cyanothece sp. BH68, Cyanothece sp. BH68K
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.