STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cce_3429Hypothetical protein; Contains Anti-Sigma-factor antagonist (STAS) and glycosyl transferase domains. (336 aa)    
Predicted Functional Partners:
cce_1468
Putative lipopolysaccharide biosynthesis.
 
  
 0.958
cce_3428
Hypothetical protein.
  
 
 0.956
cce_1994
Unknown.
 
  
 0.949
cce_4177
Hypothetical protein; Contains a GGDEF domain, Forkhead-associated domain, EAL domain, SMAD/FHA domain, and a PAS fold domain.
  
  
 0.860
cce_4651
Hypothetical protein; Contains an EAL signaling domain.
  
  
 0.860
cce_0656
Two-component hybrid sensor and regulator.
  
  
 0.842
cce_3739
Putative UDP-N-acetyl-D-mannosaminuronic acid transferase; Belongs to the glycosyltransferase 26 family.
    
 0.829
pmgA
Photomixotrophic growth related protein.
  
 
 0.817
cce_3319
Hypothetical protein; Contains an ATP-binding region, ATPase-like domain.
  
 
 0.817
cce_1521
Unknown; Contains PAS, GGDEF, EAL, Response regulator receiver, CheY-like, and PAS fold-3 domains.
  
  
 0.812
Your Current Organism:
Crocosphaera subtropica
NCBI taxonomy Id: 43989
Other names: C. subtropica ATCC 51142, Crocosphaera subtropica ATCC 51142, Cyanothece sp. ATCC 51142, Cyanothece sp. BH68, Cyanothece sp. BH68K
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.