Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
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[Homology]
Score
cce_3434Putative 2',5' RNA ligase. (197 aa)    
Predicted Functional Partners:
cce_3433
Unknown.
       0.682
cinA
Competence-damage protein; Belongs to the CinA family.
     
 0.627
cce_0264
Unknown.
  
     0.514
cce_0230
Unknown.
  
     0.509
cce_1293
Unknown.
  
     0.508
cce_4509
Unknown; Contains a cytochrome C region domain.
  
     0.505
bioD
Dethiobiotin synthase; Catalyzes a mechanistically unusual reaction, the ATP- dependent insertion of CO2 between the N7 and N8 nitrogen atoms of 7,8- diaminopelargonic acid (DAPA) to form an ureido ring.
  
  
 0.484
cce_4124
Putative thiol-specific antioxidant protein.
 
     0.479
cce_2045
Unknown; Contains a TPR-like helical domain.
  
     0.458
cce_3953
Conserved hypothetical protein.
  
     0.435
Your Current Organism:
Crocosphaera subtropica
NCBI taxonomy Id: 43989
Other names: C. subtropica ATCC 51142, Crocosphaera subtropica ATCC 51142, Cyanothece sp. ATCC 51142, Cyanothece sp. BH68, Cyanothece sp. BH68K
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