STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cce_3460Glycosyl transferase, group 1. (367 aa)    
Predicted Functional Partners:
cce_3459
Unknown; Contains a Six-hairpin glycosidase domain.
   0.962
manA1
Mannose-6-phosphate isomerase.
 
 
    0.900
manA2
Mannose-6-phosphate isomerase.
 
 
    0.606
cce_3139
Unknown; Contains a glycosyl transferase, family 2 and Tetratricopeptide TPR_1 domains.
 
   0.491
cce_3245
Unknown.
    
 
 0.467
cce_3235
Glycosyl transferase, group 1.
  
     0.455
glgA1
Glycogen synthase; Synthesizes alpha-1,4-glucan chains using ADP-glucose.
 
      0.418
Your Current Organism:
Crocosphaera subtropica
NCBI taxonomy Id: 43989
Other names: C. subtropica ATCC 51142, Crocosphaera subtropica ATCC 51142, Cyanothece sp. ATCC 51142, Cyanothece sp. BH68, Cyanothece sp. BH68K
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.