STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
bicAPutative bicarbonate transporter. (561 aa)    
Predicted Functional Partners:
icfA1
Beta-carbonic anhydrase, carboxysomal; Reversible hydration of carbon dioxide. Belongs to the beta-class carbonic anhydrase family.
 
  
 0.914
icfA2
Beta-carbonic anhydrase, periplasmic.
 
  
 0.796
sbtA
Sodium dependent bicarbonate transporter.
     
 0.787
cupA
Protein involved in constitutive low affinity CO2 uptake.
      
 0.719
ndhF4
NADH dehydrogenase subunit 5.
  
  
 0.707
cupB
Protein involved in constitutive low affinity CO2 uptake.
      
 0.679
ndhD4
NADH dehydrogenase subunit 4.
   
 
 0.666
cce_3078
Polyketide synthase.
  
 
 0.608
ccmM
Carbon dioxide concentrating mechanism protein.
    
 0.601
ndhL
NADH dehydrogenase subunit L; NDH-1 shuttles electrons from an unknown electron donor, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory and/or the photosynthetic chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation, and thus conserves the redox energy in a proton gradient. Cyanobacterial NDH-1 also plays a role in inorganic carbon-concentration.
      
 0.586
Your Current Organism:
Crocosphaera subtropica
NCBI taxonomy Id: 43989
Other names: C. subtropica ATCC 51142, Crocosphaera subtropica ATCC 51142, Cyanothece sp. ATCC 51142, Cyanothece sp. BH68, Cyanothece sp. BH68K
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