STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cce_3498Protein-arginine deiminase. (664 aa)    
Predicted Functional Partners:
aspA
Aspartoacylase; Belongs to the AspA/AstE family. Aspartoacylase subfamily.
  
     0.769
cce_1172
Unknown; Contains a winged helix repressor DNA-binding and a Pleckstrin/ G-protein domain, interacting region domains.
  
     0.743
cce_3110
Hypothetical protein; Contains DUF683.
  
     0.741
ho2
Heme oxygenase.
  
     0.722
ho1
Heme oxygenase (decyclizing).
  
     0.711
cce_1288
Putative lipoxygenase.
  
     0.695
cce_1093
Hypothetical protein; Contains a TROVE domain.
  
     0.640
gltS
Sodium/glutamate symporter; Catalyzes the sodium-dependent transport of glutamate. Belongs to the glutamate:Na(+) symporter (ESS) (TC 2.A.27) family.
       0.634
cce_4673
Beta-glucosidase.
  
  
 0.627
cce_5143
Contains low-density lipoprotein receptor YWTD repeat domains.
  
   
 0.572
Your Current Organism:
Crocosphaera subtropica
NCBI taxonomy Id: 43989
Other names: C. subtropica ATCC 51142, Crocosphaera subtropica ATCC 51142, Cyanothece sp. ATCC 51142, Cyanothece sp. BH68, Cyanothece sp. BH68K
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