STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cce_3507Hypothetical protein; Contains DUF318, transmembrane. (345 aa)    
Predicted Functional Partners:
cce_3506
Unknown.
 
  
 0.957
cce_3505
Unknown; Contains a TolB, C-terminal domain.
 
     0.776
crtR
Beta-carotene hydroxylase.
  
     0.544
cce_2371
Unknown.
  
     0.541
cyl0033
Putative ribonuclease H.
  
     0.504
cce_3508
Putative Oxidoreductase iron-sulphur binding subunit, IorA.
       0.446
cce_3509
Unknown; Contains Molybdopterin dehydrogenase, FAD-binding and CO dehydrogenase flavoprotein, C-terminal domains.
       0.446
cce_3510
Putative Carbon monoxide dehydrogenase molybdoprotein.
       0.446
Your Current Organism:
Crocosphaera subtropica
NCBI taxonomy Id: 43989
Other names: C. subtropica ATCC 51142, Crocosphaera subtropica ATCC 51142, Cyanothece sp. ATCC 51142, Cyanothece sp. BH68, Cyanothece sp. BH68K
Server load: low (32%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.