Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
cce_3523Unknown. (212 aa)    
Predicted Functional Partners:
ccmK2
Carbon dioxide concentrating mechanism protein.
 
 
 
 0.732
ccmO
Carbon dioxide concentrating mechanism protein.
 
 
 
 0.719
ccmL
Carbon dioxide concentrating mechanism protein.
 
 
 
 0.701
ccmK1
Carbon dioxide concentrating mechanism protein.
 
 
 
 0.697
ccmK4
Carbon dioxide concentrating mechanism protein.
 
 
 
 0.687
cce_2067
Carbohydrate kinase, FGGY family.
  
     0.547
cce_3627
DUF1257-containing protein.
  
     0.524
cce_1971
Unknown.
    
   0.489
ccmK3
Carbon dioxide concentrating mechanism protein.
 
 
 
 0.438
Your Current Organism:
Crocosphaera subtropica
NCBI taxonomy Id: 43989
Other names: C. subtropica ATCC 51142, Crocosphaera subtropica ATCC 51142, Cyanothece sp. ATCC 51142, Cyanothece sp. BH68, Cyanothece sp. BH68K
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