STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cce_3549Hypothetical protein. (156 aa)    
Predicted Functional Partners:
cce_2094
Hypothetical protein; Contains a Methyltransferase type 11 domain.
     0.756
cce_3078
Polyketide synthase.
  
 
 0.505
cce_3548
Hypothetical protein; Contains a YiaAB two helix domain.
       0.495
cce_3079
Probable polyketide synthase.
  
 
 0.483
cce_3550
Transposase.
       0.446
metH
5-methyltetrahydrofolate--homocysteine methyltransferase; Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate.
  
  
 0.436
guaA
GMP synthetase; Catalyzes the synthesis of GMP from XMP.
  
  
 0.427
cce_3077
AMP-dependent synthetase and ligase, probable acyl-CoA synthase.
  
  
 0.420
lysC
Aspartate kinase.
  
  
 0.415
Your Current Organism:
Crocosphaera subtropica
NCBI taxonomy Id: 43989
Other names: C. subtropica ATCC 51142, Crocosphaera subtropica ATCC 51142, Cyanothece sp. ATCC 51142, Cyanothece sp. BH68, Cyanothece sp. BH68K
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.