Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
cce_3562rfrA family pentapeptide repeat. (194 aa)    
Predicted Functional Partners:
cce_0090
rfrA family pentapeptide repeat.
  
     0.775
cce_3083
rfrA family pentapeptide repeat.
  
     0.775
cce_4397
rfrA family pentapeptide repeat.
  
     0.775
cce_4529
rfrA family pentapeptide repeat.
  
     0.775
cce_4636
rfrA family pentapeptide repeat.
  
     0.775
cce_2103
rfrA family pentapeptide repeat.
  
     0.774
rfr32
rfrA family pentapeptide repeat.
  
     0.769
cce_4799
rfrA family pentapeptide repeat.
  
     0.656
cce_3561
rfrA family pentapeptide repeat.
 
    
0.639
cce_2203
rfrA family pentapeptide repeat.
  
     0.579
Your Current Organism:
Crocosphaera subtropica
NCBI taxonomy Id: 43989
Other names: C. subtropica ATCC 51142, Crocosphaera subtropica ATCC 51142, Cyanothece sp. ATCC 51142, Cyanothece sp. BH68, Cyanothece sp. BH68K
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