Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
cce_3577Hypothetical protein; Contains a GGDEF domain. (290 aa)    
Predicted Functional Partners:
cce_4651
Hypothetical protein; Contains an EAL signaling domain.
 
 0.903
cce_1555
Unknown; Contains a GAF domain.
 
      0.899
cce_0115
Response regulator.
 
  
 0.806
cce_0539
Hypothetical protein; Contains EAL and PAS fold-3 domains.
 
 0.798
cce_3578
DUF839-containing protein.
       0.773
cce_1435
Hypothetical protein; Contains an EAL signaling domain.
  
    0.647
cce_1521
Unknown; Contains PAS, GGDEF, EAL, Response regulator receiver, CheY-like, and PAS fold-3 domains.
 
 
0.594
cce_2232
Two-component sensor histidine kinase; Involved in chemotaxis. Part of a chemotaxis signal transduction system that modulates chemotaxis in response to various stimuli. Catalyzes the demethylation of specific methylglutamate residues introduced into the chemoreceptors (methyl-accepting chemotaxis proteins or MCP) by CheR. Also mediates the irreversible deamidation of specific glutamine residues to glutamic acid. Belongs to the CheB family.
  
  
 0.562
cce_1244
Unknown; Contains a GGDEF domain and EAL domain.
 
  
0.550
cce_4177
Hypothetical protein; Contains a GGDEF domain, Forkhead-associated domain, EAL domain, SMAD/FHA domain, and a PAS fold domain.
 
 
0.539
Your Current Organism:
Crocosphaera subtropica
NCBI taxonomy Id: 43989
Other names: C. subtropica ATCC 51142, Crocosphaera subtropica ATCC 51142, Cyanothece sp. ATCC 51142, Cyanothece sp. BH68, Cyanothece sp. BH68K
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