Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
cce_3587Probable zinc-binding oxidoreductase. (334 aa)    
Predicted Functional Partners:
cce_3080
Polyketide synthase type I.
 
 
 0.963
cce_3761
Polyketide synthase.
 
 
 0.949
cce_3074
Polyketide synthase type I.
 
 
 
 0.929
fabF
3-oxoacyl-[acyl-carrier-protein] synthase I/II; Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP.
 
 
  
 0.878
cce_0149
Probable protein phosphatase.
    
 
 0.837
cce_3078
Polyketide synthase.
  
 
 0.721
cce_3034
Peptide synthetase.
    
 0.704
cce_3075
Peptide synthetase.
    
 0.695
cce_3077
AMP-dependent synthetase and ligase, probable acyl-CoA synthase.
  
 
 0.657
cce_3079
Probable polyketide synthase.
  
 
 0.655
Your Current Organism:
Crocosphaera subtropica
NCBI taxonomy Id: 43989
Other names: C. subtropica ATCC 51142, Crocosphaera subtropica ATCC 51142, Cyanothece sp. ATCC 51142, Cyanothece sp. BH68, Cyanothece sp. BH68K
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