STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cce_3598Hypothetical protein; Contains a Ion transport 2, bacterial domain. (351 aa)    
Predicted Functional Partners:
cce_3599
Hypothetical protein.
 
     0.878
nifU
Iron-sulfur cluster assembly protein; May be involved in the formation or repair of [Fe-S] clusters present in iron-sulfur proteins.
   
    0.809
cce_3597
Sodium/hydrogen exchanger.
 
    0.722
cce_1661
Hypothetical protein; Contains DUF421.
 
     0.642
cce_3312
Hypothetical protein; Contains DUF1206.
  
     0.619
cce_3601
Probable short-chain dehydrogenase/reductase SDR.
 
     0.552
pheT
phenylalanyl-tRNA synthetase beta subunit; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily.
    
   0.493
guaA
GMP synthetase; Catalyzes the synthesis of GMP from XMP.
     
 0.424
cce_3600
Hypothetical protein.
       0.421
cce_3542
Conserved hypothetical protein.
  
     0.419
Your Current Organism:
Crocosphaera subtropica
NCBI taxonomy Id: 43989
Other names: C. subtropica ATCC 51142, Crocosphaera subtropica ATCC 51142, Cyanothece sp. ATCC 51142, Cyanothece sp. BH68, Cyanothece sp. BH68K
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.