STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cce_3632Putative prenyltransferase. (383 aa)    
Predicted Functional Partners:
cce_2249
Hypothetical protein; Contains TPR_1 tetratricopeptide repeat domains.
 
   
 0.796
cce_2288
Unknown; Contains TPR_1 tetratricopeptide repeat domains.
  
   0.789
cce_1756
Hypothetical protein; Contains TPR_1 tetratricopeptide repeat domains.
 
   0.784
psb27
Photosystem II 11 kD protein; Plays a role in the repair and/or biogenesis of the calcium- manganese-oxide cluster on the lumenal face of the thylakoid membrane. Its presence in a photosystem II (PSII) preparation prevents binding of some small extrinsic subunits and thus assembly of calcium-manganese- oxide cluster.
       0.773
cce_2105
Hypothetical protein; Contains tetratricopeptide repeat domains.
  
   0.700
htpG
Heat shock protein Hsp90; Molecular chaperone. Has ATPase activity.
  
 0.652
cce_2278
Hypothetical protein; Contains TPR_1 tetratricopeptide repeat domains.
  
   0.648
cce_4177
Hypothetical protein; Contains a GGDEF domain, Forkhead-associated domain, EAL domain, SMAD/FHA domain, and a PAS fold domain.
  
 
 0.646
cce_4651
Hypothetical protein; Contains an EAL signaling domain.
  
 
 0.646
cce_4176
Hypothetical protein; Contains a GGDEF domain, Forkhead-associated domain, EAL domain, and SMAD/FHA domain.
  
 
 0.621
Your Current Organism:
Crocosphaera subtropica
NCBI taxonomy Id: 43989
Other names: C. subtropica ATCC 51142, Crocosphaera subtropica ATCC 51142, Cyanothece sp. ATCC 51142, Cyanothece sp. BH68, Cyanothece sp. BH68K
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.