STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cce_3641ATP-binding protein of ABC transporter. (331 aa)    
Predicted Functional Partners:
cce_3642
Putative ABC-2 type transport system permease protein.
 
 
 0.976
cce_3643
Unknown.
 
  
 0.931
cmpD
Bicarbontate transport system ATP-binding protein.
 
    
0.835
cce_4521
ATP-binding protein of branched-chain amino acid ABC transporter.
 
     
0.822
cce_3644
Conserved hypothetical protein.
 
     0.776
cce_1471
Putative ABC-2 type transporter.
  
  
 0.565
cce_0161
Putative membrane protein.
  
 
 0.552
cce_3078
Polyketide synthase.
  
 
 0.470
cce_3645
Putative peptidase C14, caspase catalytic.
       0.439
natA
ATP-binding protein of ABC transporter.
     
0.412
Your Current Organism:
Crocosphaera subtropica
NCBI taxonomy Id: 43989
Other names: C. subtropica ATCC 51142, Crocosphaera subtropica ATCC 51142, Cyanothece sp. ATCC 51142, Cyanothece sp. BH68, Cyanothece sp. BH68K
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.