STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cce_3678Unknown. (117 aa)    
Predicted Functional Partners:
cbiQ2
Putative cobalt ABC transporter permease protein.
 
 0.996
cbiM
Cobalamin (vitamin B12) biosynthesis.
 
  
  0.978
cce_4071
Probable cobalt ABC transporter ATP binding protein.
 
 0.976
cbiQ3
Putative cobalt ABC transporter permease protein.
 
 
 0.908
cce_3357
Conserved hypothetical protein.
    
 0.908
cbiGH
Probable bifunctional Cobalamin (vitamin B12) biosynthesis/precorrin-3B C17-methyltransferase.
  
  
 0.829
cbiQ1
Putative cobalt ABC transporter permease protein.
  
 
 0.820
cbiJ
Probable precorrin-6x reductase.
  
  
 0.720
cce_0109
Hypothetical protein; Contains a polysaccharide deacetylase domain.
  
     0.713
cce_2642
Circadian phase modifier CpmA-like protein.
  
    0.675
Your Current Organism:
Crocosphaera subtropica
NCBI taxonomy Id: 43989
Other names: C. subtropica ATCC 51142, Crocosphaera subtropica ATCC 51142, Cyanothece sp. ATCC 51142, Cyanothece sp. BH68, Cyanothece sp. BH68K
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.