STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
glcFGlycolate oxidase subunit (Fe-S) protein. (455 aa)    
Predicted Functional Partners:
glcD
Glycolate oxidase subunit.
 
 0.996
glcE
Glycolate oxidase subunit.
 
 0.996
cce_2871
Alanine--glyoxylate/serine-pyruvate aminotransferase, aminotransferase class V.
    
 0.906
cce_0591
KHG-KDPG bifunctional aldolase.
     
 0.904
cce_0753
Probable HAD-superfamily hydrolase, subfamily IA, variant 1.
    
 0.903
cce_1821
Putative HAD-superfamily hydrolase, subfamily IA.
    
 0.903
nifJ
Pyruvate oxidoreductase; Oxidoreductase required for the transfer of electrons from pyruvate to flavodoxin.
     
 0.631
cce_2448
Putative chromosome partitioning protein, ParA family.
      
 0.583
sdhB
Succinate dehydrogenase iron-sulphur protein subunit; Belongs to the succinate dehydrogenase/fumarate reductase iron-sulfur protein family.
 
 
   0.571
cce_3706
ThiamineS-like protein.
       0.467
Your Current Organism:
Crocosphaera subtropica
NCBI taxonomy Id: 43989
Other names: C. subtropica ATCC 51142, Crocosphaera subtropica ATCC 51142, Cyanothece sp. ATCC 51142, Cyanothece sp. BH68, Cyanothece sp. BH68K
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