STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cce_3721Hypothetical protein; Contains a Rho termination factor, N-terminal domain. (400 aa)    
Predicted Functional Partners:
cce_1139
Putative phosphate transporter, phosphate binding protein.
 
      0.899
cce_1752
Putative glycoside hydrolase, family 57; Belongs to the glycosyl hydrolase 57 family.
 
     0.745
cce_3580
Conserved hypothetical protein.
  
     0.702
cce_0453
Putative transcriptional regulator AbrB.
  
     0.686
ndhM
NADH dehydrogenase subunit M; NDH-1 shuttles electrons from an unknown electron donor, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory and/or the photosynthetic chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation, and thus conserves the redox energy in a proton gradient. Cyanobacterial NDH-1 also plays a role in inorganic carbon-concentration.
  
     0.679
cupB
Protein involved in constitutive low affinity CO2 uptake.
  
     0.653
cupA
Protein involved in constitutive low affinity CO2 uptake.
  
     0.645
cytM
Cytochrome cM.
  
     0.634
cce_1283
Unknown.
  
     0.620
cce_3242
Unknown; Contains a transcriptional regulator AbrB domain.
  
     0.612
Your Current Organism:
Crocosphaera subtropica
NCBI taxonomy Id: 43989
Other names: C. subtropica ATCC 51142, Crocosphaera subtropica ATCC 51142, Cyanothece sp. ATCC 51142, Cyanothece sp. BH68, Cyanothece sp. BH68K
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.