STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
crtBPhytoene synthase. (310 aa)    
Predicted Functional Partners:
cce_3754
Phytoene desaturase.
  
 0.993
crtE
Geranylgeranyl pyrophosphate synthase; Belongs to the FPP/GGPP synthase family.
  
 0.971
crtQ
Zeta-carotene desaturase; Catalyzes the conversion of zeta-carotene to lycopene via the intermediary of neurosporene. It carries out two consecutive desaturations (introduction of double bonds) at positions C-7 and C-7'.
   
 0.934
chlP
Geranylgeranyl hydrogenase.
 
 
 0.926
sds
Solanesyl diphosphate synthase; Belongs to the FPP/GGPP synthase family.
  
 0.899
cce_1534
Putative carotenoid isomerase.
 
  
 0.870
cce_2220
Unknown; Contains FAD dependent oxidoreductase and Phytoene dehydrogenase-related domains.
 
  
 0.861
cce_4342
Hypothetical protein; Contains FAD dependent oxidoreductase and Phytoene dehydrogenase-related domains.
  
 0.851
cce_2396
Unknown.
  
 0.835
uppS2
Undecaprenyl pyrophosphate synthetase; Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids.
   
 
 0.822
Your Current Organism:
Crocosphaera subtropica
NCBI taxonomy Id: 43989
Other names: C. subtropica ATCC 51142, Crocosphaera subtropica ATCC 51142, Cyanothece sp. ATCC 51142, Cyanothece sp. BH68, Cyanothece sp. BH68K
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