STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cce_3794Putative globin-like protein; Belongs to the globin family. (259 aa)    
Predicted Functional Partners:
cce_2175
Hypothetical protein; Contains Forkhead-associated, ferredoxin, and Oxidoreductase FAD/NAD(P)-binding domains.
  
 0.948
cce_3796
Transcriptional regulator, AraC family.
 
 
 0.708
cce_3795
Hypothetical protein; Contains a methyltransferase type 11 domain.
  
   0.639
nadD
Nicotinate-nucleotide adenylyltransferase; Belongs to the NadD family.
   
    0.602
hcp
Putative Hybrid cluster protein; Catalyzes the reduction of hydroxylamine to form NH(3) and H(2)O.
  
  
 0.562
cce_1521
Unknown; Contains PAS, GGDEF, EAL, Response regulator receiver, CheY-like, and PAS fold-3 domains.
  
  
 0.561
cce_3078
Polyketide synthase.
  
  
 0.531
cce_4177
Hypothetical protein; Contains a GGDEF domain, Forkhead-associated domain, EAL domain, SMAD/FHA domain, and a PAS fold domain.
  
  
 0.469
cce_4651
Hypothetical protein; Contains an EAL signaling domain.
  
  
 0.469
cce_2243
Unknown; Contains a GGDEF domain, EAL domain, and a pass fold-4 domain.
  
  
 0.468
Your Current Organism:
Crocosphaera subtropica
NCBI taxonomy Id: 43989
Other names: C. subtropica ATCC 51142, Crocosphaera subtropica ATCC 51142, Cyanothece sp. ATCC 51142, Cyanothece sp. BH68, Cyanothece sp. BH68K
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