Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
cce_3798Hypothetical protein; Contains a cyclic nucleotide-binding domain and a winged helix repressor DNA-binding domain. (233 aa)    
Predicted Functional Partners:
ntcA
Nitrogen-responsive regulatory protein.
  
     0.726
cce_1423
Transcriptional regulator.
  
     0.707
cce_3795
Hypothetical protein; Contains a methyltransferase type 11 domain.
 
     0.707
cce_1816
Transcriptional regulatory protein.
  
     0.662
cce_2304
Hypothetical protein; Contains tetratricopeptide repeat domains.
  
 
   0.580
cce_3797
Hypothetical protein.
       0.578
cce_1612
Probable cyclic nucleotide-binding protein.
  
     0.552
cce_4728
Adenylyl/guanylyl cyclase.
 
 
 0.513
rpoB
RNA polymerase beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.474
cce_0974
Transcriptional Regulator, TetR family.
  
   
 0.470
Your Current Organism:
Crocosphaera subtropica
NCBI taxonomy Id: 43989
Other names: C. subtropica ATCC 51142, Crocosphaera subtropica ATCC 51142, Cyanothece sp. ATCC 51142, Cyanothece sp. BH68, Cyanothece sp. BH68K
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