Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
cce_3799Hypothetical protein; Contains an alpha/beta hydrolase fold-1 domain. (332 aa)    
Predicted Functional Partners:
cce_3077
AMP-dependent synthetase and ligase, probable acyl-CoA synthase.
  
 0.800
cce_3078
Polyketide synthase.
 
 0.797
cce_3079
Probable polyketide synthase.
 
 0.778
cce_3800
Hypothetical protein; Contains a purine and other phosphorylases, family 1 domain.
  
    0.778
cce_4863
Hypothetical protein; Contains a FAD-dependent pyridine nucleotide-disulphide oxidoreductase domain.
  
   0.651
cce_1496
Hypothetical protein.
  
     0.629
cce_3793
Integrase.
  
     0.547
cce_3792
Hypothetical protein.
  
     0.531
cce_3801
Putative iron(III)-transport ATP-binding protein; Belongs to the ABC transporter superfamily.
     
 0.484
cce_3080
Polyketide synthase type I.
  
 0.473
Your Current Organism:
Crocosphaera subtropica
NCBI taxonomy Id: 43989
Other names: C. subtropica ATCC 51142, Crocosphaera subtropica ATCC 51142, Cyanothece sp. ATCC 51142, Cyanothece sp. BH68, Cyanothece sp. BH68K
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