STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cce_3867Truncated putative carbohydrate-selective OprB family porin; Truncated due to frameshift; Belongs to the OprB family. (203 aa)    
Predicted Functional Partners:
cce_1893
Unknown.
  
 
   0.845
cce_1053
Conserved hypothetical protein.
  
     0.718
cce_3864
Putative S-layer OprB family carbohydrate-selective porin; Belongs to the OprB family.
 
     0.691
cce_2720
Hypothetical protein.
  
     0.688
cce_3898
Unknown.
  
     0.684
cce_0098
Conserved hypothetical protein.
  
     0.675
truA
tRNA pseudouridine synthase; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs.
  
  
 0.660
cce_4519
Hypothetical protein; Contains a beta-lactamase-like domain.
  
     0.650
cce_1943
Unknown.
  
     0.639
cce_3505
Unknown; Contains a TolB, C-terminal domain.
  
     0.631
Your Current Organism:
Crocosphaera subtropica
NCBI taxonomy Id: 43989
Other names: C. subtropica ATCC 51142, Crocosphaera subtropica ATCC 51142, Cyanothece sp. ATCC 51142, Cyanothece sp. BH68, Cyanothece sp. BH68K
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.