Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
cce_3880Sugar ABC transporter ATP binding protein. (494 aa)    
Predicted Functional Partners:
cce_2447
Permease protein of sugar ABC transporter; Belongs to the binding-protein-dependent transport system permease family.
 
 0.998
cce_0245
Putative inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
 
 0.995
cce_3881
Putative basic membrane lipoprotein.
 
 
 0.995
lepB1
Signal peptidase I; Belongs to the peptidase S26 family.
       0.522
cce_2374
Putative ribose ABC transporter.
 
   
 0.474
cce_3883
MazG family protein.
       0.435
deoC
Deoxyribose-phosphate aldolase; Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy-D-ribose 5- phosphate; Belongs to the DeoC/FbaB aldolase family. DeoC type 1 subfamily.
 
   
 0.400
Your Current Organism:
Crocosphaera subtropica
NCBI taxonomy Id: 43989
Other names: C. subtropica ATCC 51142, Crocosphaera subtropica ATCC 51142, Cyanothece sp. ATCC 51142, Cyanothece sp. BH68, Cyanothece sp. BH68K
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