STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cce_3914Probable short-chain dehydrogenase/reductase SDR; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (251 aa)    
Predicted Functional Partners:
cce_3034
Peptide synthetase.
 
  
 0.920
cce_3042
Peptide synthetase.
 
  
 0.916
cce_3075
Peptide synthetase.
 
    0.902
cce_3043
Putative thioester reductase.
      0.861
putA
Bifunctional proline dehydrogenase/delta-1-pyrroline-5-carboxylate dehydrogenase; Belongs to the aldehyde dehydrogenase family.
   
    0.709
cce_3912
Hypothetical protein.
       0.636
cce_3913
Hypothetical protein; Contains a ribbon-helix-helix domain.
       0.636
cce_3911
Hypothetical protein; Contains DUF497.
       0.615
gmk
Guanylate kinase; Essential for recycling GMP and indirectly, cGMP.
      0.603
cce_3050
Peptide synthetase; Belongs to the ATP-dependent AMP-binding enzyme family.
 
  
 0.585
Your Current Organism:
Crocosphaera subtropica
NCBI taxonomy Id: 43989
Other names: C. subtropica ATCC 51142, Crocosphaera subtropica ATCC 51142, Cyanothece sp. ATCC 51142, Cyanothece sp. BH68, Cyanothece sp. BH68K
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