Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
cce_3920WD-repeat protein. (1169 aa)    
Predicted Functional Partners:
cce_0149
Probable protein phosphatase.
    
 0.829
cce_5005
Hypothetical protein; Contains Helicase, C-terminal, Type III restriction enzyme, res subunit and DEAD/DEAH box helicase, N-terminal domains.
 
 
 0.826
cce_2163
Hypothetical protein.
 
     0.640
cce_1076
Hypothetical protein; Contains a GUN4-like domain and a Peptidase, trypsin-like serine and cysteine domain.
  
 
  0.500
cce_3712
Putative histone deacetylase superfamily protein.
    
  0.469
cce_3013
Hypothetical protein; Contains a WD-40 repeat and peptidase C14, caspase catalytic subunit p20.
     0.450
cce_4519
Hypothetical protein; Contains a beta-lactamase-like domain.
    
  0.445
alaS
alanyl-tRNA synthetase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain.
    
 0.439
cce_0481
Unknown; Contains TPR_1 tetratricopeptide repeat domains.
  
 
  0.414
cce_3924
WD-repeat protein.
 
    
0.414
Your Current Organism:
Crocosphaera subtropica
NCBI taxonomy Id: 43989
Other names: C. subtropica ATCC 51142, Crocosphaera subtropica ATCC 51142, Cyanothece sp. ATCC 51142, Cyanothece sp. BH68, Cyanothece sp. BH68K
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