STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cce_3923Hypothetical protein; Contains glycoside hydrolase, family 19 and peptidase M15A domains. (405 aa)    
Predicted Functional Partners:
cce_4707
Hypothetical protein; Contains an OmpA/MotB domain.
   
 
 0.706
cce_1908
Conserved hypothetical protein.
    
 
 0.588
cce_2118
Conserved hypothetical protein.
    
 
 0.588
cce_3922
Hypothetical protein.
       0.580
cce_3924
WD-repeat protein.
 
    0.551
slt
Probable soluble lytic transglycosylase.
  
  
 0.502
cce_4147
Penicillin-binding protein 1B.
  
  
 0.449
cce_3925
Unknown.
  
    0.437
cce_3921
Hypothetical protein.
       0.425
cce_2943
Serine/threonine protein kinase.
  
 
 0.421
Your Current Organism:
Crocosphaera subtropica
NCBI taxonomy Id: 43989
Other names: C. subtropica ATCC 51142, Crocosphaera subtropica ATCC 51142, Cyanothece sp. ATCC 51142, Cyanothece sp. BH68, Cyanothece sp. BH68K
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.