Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
cce_0630 | ctpA | cce_0630 | cce_3991 | Putative peptidase M50. | Carboxyl-terminal processing protease; Belongs to the peptidase S41A family. | 0.658 |
cce_0630 | psbO | cce_0630 | cce_2572 | Putative peptidase M50. | Photosystem II manganese-stabilizing polypeptide, 33 kD extrinsic protein; MSP binds to a putative Mn-binding protein and keeps 2 of the 4 Mn-atoms associated with PSII. | 0.437 |
cce_1777 | ctpA | cce_1777 | cce_3991 | Probable two-component hybrid sensor and regulator. | Carboxyl-terminal processing protease; Belongs to the peptidase S41A family. | 0.401 |
cce_1777 | nifJ | cce_1777 | cce_0953 | Probable two-component hybrid sensor and regulator. | Pyruvate oxidoreductase; Oxidoreductase required for the transfer of electrons from pyruvate to flavodoxin. | 0.456 |
cce_1777 | slt | cce_1777 | cce_1879 | Probable two-component hybrid sensor and regulator. | Probable soluble lytic transglycosylase. | 0.697 |
cce_3993 | ctpA | cce_3993 | cce_3991 | C-5 cytosine-specific DNA methylase. | Carboxyl-terminal processing protease; Belongs to the peptidase S41A family. | 0.470 |
cce_3993 | xthA | cce_3993 | cce_3992 | C-5 cytosine-specific DNA methylase. | Exodeoxyribonuclease III. | 0.713 |
ctpA | cce_0630 | cce_3991 | cce_0630 | Carboxyl-terminal processing protease; Belongs to the peptidase S41A family. | Putative peptidase M50. | 0.658 |
ctpA | cce_1777 | cce_3991 | cce_1777 | Carboxyl-terminal processing protease; Belongs to the peptidase S41A family. | Probable two-component hybrid sensor and regulator. | 0.401 |
ctpA | cce_3993 | cce_3991 | cce_3993 | Carboxyl-terminal processing protease; Belongs to the peptidase S41A family. | C-5 cytosine-specific DNA methylase. | 0.470 |
ctpA | nifJ | cce_3991 | cce_0953 | Carboxyl-terminal processing protease; Belongs to the peptidase S41A family. | Pyruvate oxidoreductase; Oxidoreductase required for the transfer of electrons from pyruvate to flavodoxin. | 0.491 |
ctpA | pheT | cce_3991 | cce_1321 | Carboxyl-terminal processing protease; Belongs to the peptidase S41A family. | phenylalanyl-tRNA synthetase beta subunit; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily. | 0.485 |
ctpA | psbO | cce_3991 | cce_2572 | Carboxyl-terminal processing protease; Belongs to the peptidase S41A family. | Photosystem II manganese-stabilizing polypeptide, 33 kD extrinsic protein; MSP binds to a putative Mn-binding protein and keeps 2 of the 4 Mn-atoms associated with PSII. | 0.523 |
ctpA | secD | cce_3991 | cce_4646 | Carboxyl-terminal processing protease; Belongs to the peptidase S41A family. | Protein export membrane protein; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA; Belongs to the SecD/SecF family. SecD subfamily. | 0.443 |
ctpA | slt | cce_3991 | cce_1879 | Carboxyl-terminal processing protease; Belongs to the peptidase S41A family. | Probable soluble lytic transglycosylase. | 0.423 |
ctpA | xthA | cce_3991 | cce_3992 | Carboxyl-terminal processing protease; Belongs to the peptidase S41A family. | Exodeoxyribonuclease III. | 0.530 |
nifJ | cce_1777 | cce_0953 | cce_1777 | Pyruvate oxidoreductase; Oxidoreductase required for the transfer of electrons from pyruvate to flavodoxin. | Probable two-component hybrid sensor and regulator. | 0.456 |
nifJ | ctpA | cce_0953 | cce_3991 | Pyruvate oxidoreductase; Oxidoreductase required for the transfer of electrons from pyruvate to flavodoxin. | Carboxyl-terminal processing protease; Belongs to the peptidase S41A family. | 0.491 |
pheT | ctpA | cce_1321 | cce_3991 | phenylalanyl-tRNA synthetase beta subunit; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily. | Carboxyl-terminal processing protease; Belongs to the peptidase S41A family. | 0.485 |
pheT | secD | cce_1321 | cce_4646 | phenylalanyl-tRNA synthetase beta subunit; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily. | Protein export membrane protein; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA; Belongs to the SecD/SecF family. SecD subfamily. | 0.914 |
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