STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
rpaBTwo-component response regulator. (243 aa)    
Predicted Functional Partners:
cce_3512
Putative diguanylate cyclase (GGDEF domain).
 
 
    0.900
cce_0689
Putative diguanylate cyclase.
 
 
    0.899
cce_2546
Probable two-component sensor histidine kinase.
 
   0.899
cce_0164
Two-component sensor histidine kinase.
 
 0.897
nblS
Two-component sensor histidine kinase.
  
 
 0.871
cce_2508
Two-component hybrid sensor and regulator.
 
 
 0.853
sasA
Adaptive-response sensory histidine kinase; May be involved in signal transduction. Participates in the KaiABC clock protein complex, which constitutes the main circadian regulator in cyanobacteria, via its interaction with KaiC. Required for robustness of the circadian rhythm of gene expression and is involved in clock outputs.
 
   0.835
cce_3379
Two-component sensor histidine kinase.
 
   0.813
cce_0016
Two-component sensor histidine kinase.
 
   0.791
cce_3327
Two-component sensor histidine kinase.
  
   0.782
Your Current Organism:
Crocosphaera subtropica
NCBI taxonomy Id: 43989
Other names: C. subtropica ATCC 51142, Crocosphaera subtropica ATCC 51142, Cyanothece sp. ATCC 51142, Cyanothece sp. BH68, Cyanothece sp. BH68K
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