Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
cce_4049acyl-CoA dehydrogenase. (602 aa)    
Predicted Functional Partners:
cce_4050
Contains an Acyl carrier protein-like domain.
 
  
  0.931
cce_1410
Hypothetical protein; Contains a HTTM domain.
  
   
 0.773
cce_3078
Polyketide synthase.
  
 0.768
cce_4538
Hypothetical protein.
  
     0.757
hoxF
NADH dehydrogenase I chain F.
   
 
 0.716
fadD
Probable long-chain-fatty-acid CoA ligase.
  
 0.693
cce_3079
Probable polyketide synthase.
  
 0.693
cce_1418
Probable AMP-dependent synthetase and ligase.
 
 0.680
cce_3014
Hypothetical protein; Contains a TPR-like helical domain.
  
     0.649
cce_3758
AMP-dependent synthetase and ligase.
 
 
 0.634
Your Current Organism:
Crocosphaera subtropica
NCBI taxonomy Id: 43989
Other names: C. subtropica ATCC 51142, Crocosphaera subtropica ATCC 51142, Cyanothece sp. ATCC 51142, Cyanothece sp. BH68, Cyanothece sp. BH68K
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