STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cce_4050Contains an Acyl carrier protein-like domain. (137 aa)    
Predicted Functional Partners:
hoxF
NADH dehydrogenase I chain F.
   
 0.988
cce_4049
acyl-CoA dehydrogenase.
 
  
 0.923
cce_3073
Peptide synthetase.
 
 
 0.895
cce_1466
Probable AMP-dependent synthetase and ligase.
 
 
 0.836
cce_3078
Polyketide synthase.
 
  
 0.831
cce_3079
Probable polyketide synthase.
 
  
 0.813
cce_3761
Polyketide synthase.
 
  
 0.785
cce_1418
Probable AMP-dependent synthetase and ligase.
 
   0.783
cce_3050
Peptide synthetase; Belongs to the ATP-dependent AMP-binding enzyme family.
 
 
 0.752
cce_3055
Peptide synthetase.
 
 
 0.751
Your Current Organism:
Crocosphaera subtropica
NCBI taxonomy Id: 43989
Other names: C. subtropica ATCC 51142, Crocosphaera subtropica ATCC 51142, Cyanothece sp. ATCC 51142, Cyanothece sp. BH68, Cyanothece sp. BH68K
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.