STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cce_4061Mg chelatase-like protein. (509 aa)    
Predicted Functional Partners:
smf
DNA processing protein.
 
 0.910
cyl0021
Hypothetical protein; Contains a phosphoribosyltransferase domain.
 
  
 0.828
comE
Competence protein.
 
  
 0.820
cce_2104
Hypothetical protein; Contains UPF0102; Belongs to the UPF0102 family.
 
  
 0.721
cce_4062
Hypothetical protein; Contains DUF262 and DUF1524 RloF domains.
       0.601
cce_4060
Serine/threonine protein kinase.
  
    0.525
cce_2408
Unknown.
  
 
 0.450
ruvC
Holliday junction resolvase; Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group.
  
   
 0.444
cce_2636
Unknown.
  
  
 0.401
cce_3364
Conserved hypothetical protein.
  
  
 0.401
Your Current Organism:
Crocosphaera subtropica
NCBI taxonomy Id: 43989
Other names: C. subtropica ATCC 51142, Crocosphaera subtropica ATCC 51142, Cyanothece sp. ATCC 51142, Cyanothece sp. BH68, Cyanothece sp. BH68K
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.