Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
cce_4083Hypothetical protein; Contains a Lipolytic enzyme, G-D-S-L domain. (399 aa)    
Predicted Functional Partners:
cce_4157
Conserved hypothetical protein.
 
     0.786
cce_4156
Carbamoyltransferase.
 
     0.706
cce_4158
Conserved hypothetical protein.
 
     0.637
cce_2241
Hypothetical protein; Contains a Filamentous haemagglutinin, N-terminal domain.
  
 
 0.635
cce_2567
Hypothetical protein; Contains an Armadillo-like helical domain.
  
     0.531
cce_1249
Unknown; Contains DUF1400.
  
     0.513
cce_2247
Hypothetical protein; Contains a beta-lactamase-like domain.
  
     0.499
cce_2173
Hypothetical protein.
  
     0.498
cce_0526
Unknown; Contains a methyltransferase FkbM domain.
  
     0.483
cce_1276
Hypothetical protein.
  
     0.452
Your Current Organism:
Crocosphaera subtropica
NCBI taxonomy Id: 43989
Other names: C. subtropica ATCC 51142, Crocosphaera subtropica ATCC 51142, Cyanothece sp. ATCC 51142, Cyanothece sp. BH68, Cyanothece sp. BH68K
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