STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
cce_4095Unknown; Contains UPF0004. (478 aa)    
Predicted Functional Partners:
cce_0751
Hypothetical protein; Contains a glycosyl transferase, family 2 domain.
     0.883
dfrA
Probable dihydrokaempferol 4-reductase.
  
     0.739
cce_2500
Hypothetical protein; Contains a radical SAM domain.
 
  
 0.730
cce_3629
Unknown; Contains a glycosyl transferase, family 2 domain.
 
     0.713
shc
Squalene-hopene-cyclase.
 
   
 0.712
cce_2109
Hypothetical protein; Contains a 4-vinyl reductase, 4VR domain.
  
  
 0.700
cce_2112
Hypothetical protein; Contains a 4-vinyl reductase, 4VR domain.
  
  
 0.700
cce_1276
Hypothetical protein.
  
    0.565
cce_4347
CHP02664-containing protein.
  
     0.442
cce_2087
Oxygen independent coprophorphyrinogen III oxidase 2; Probably acts as a heme chaperone, transferring heme to an unknown acceptor. Binds one molecule of heme per monomer, possibly covalently. Binds 1 [4Fe-4S] cluster. The cluster is coordinated with 3 cysteines and an exchangeable S-adenosyl-L-methionine. Belongs to the anaerobic coproporphyrinogen-III oxidase family.
  
  
 0.419
Your Current Organism:
Crocosphaera subtropica
NCBI taxonomy Id: 43989
Other names: C. subtropica ATCC 51142, Crocosphaera subtropica ATCC 51142, Cyanothece sp. ATCC 51142, Cyanothece sp. BH68, Cyanothece sp. BH68K
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.