STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cce_4099Hypothetical protein; Contains a YcaO_like domain. (764 aa)    
Predicted Functional Partners:
cce_4098
Putative amidohydrolase 2.
 
     0.887
cce_4199
ATP-binding protein of ABC transporter.
  
  
 0.779
cce_4100
Unknown.
       0.773
cce_1471
Putative ABC-2 type transporter.
  
  
 0.761
cce_4102
Conserved hypothetical protein.
 
     0.740
cce_4101
Probable peroxidase.
       0.697
cce_4097
Two-component sensor serine/threonine kinase.
 
   
 0.692
cce_4660
Hypothetical protein; Contains a WD-repeat, a PAS region and a response regulator receiver domain.
 
   
 0.683
cce_0130
Contains an abortive infection protein domain.
  
  
 0.681
cce_2239
Contains an abortive infection protein domain.
  
  
 0.681
Your Current Organism:
Crocosphaera subtropica
NCBI taxonomy Id: 43989
Other names: C. subtropica ATCC 51142, Crocosphaera subtropica ATCC 51142, Cyanothece sp. ATCC 51142, Cyanothece sp. BH68, Cyanothece sp. BH68K
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.