STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cce_4120Unknown; Contains a cobyrinic acid a,c-diamide synthase domain. (224 aa)    
Predicted Functional Partners:
cce_4121
Unknown.
       0.781
cce_4884
Chromosome partitioning protein, ParB family; Belongs to the ParB family.
 
 
 0.744
cce_5033
Chromosome partitioning protein, ParB family; Belongs to the ParB family.
 
 
 0.741
cce_5153
Probable chromosome partitioning protein, ParA family.
  
     0.698
cce_5032
Putative cobyrinic acid a,c-diamide synthase.
  
     0.667
cce_2458
Conserved hypothetical protein.
  
     0.562
cce_4119
Unknown; Contains a peptidase M50 and CBS domain; Belongs to the peptidase M50B family.
       0.539
rpl34
50S ribosomal protein L34; Belongs to the bacterial ribosomal protein bL34 family.
 
   
 0.533
cce_3783
Hypothetical protein; Contains a DNA methylase N-4/N-6 domain.
  
 
 0.524
cce_3374
Unknown; Contains a Cobyrinic acid a,c-diamide synthase domain.
  
     0.484
Your Current Organism:
Crocosphaera subtropica
NCBI taxonomy Id: 43989
Other names: C. subtropica ATCC 51142, Crocosphaera subtropica ATCC 51142, Cyanothece sp. ATCC 51142, Cyanothece sp. BH68, Cyanothece sp. BH68K
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.