STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cce_4125Amino acid ABC transporter permease protein, His/Glu/Gln/Arg/opine. (391 aa)    
Predicted Functional Partners:
cce_0948
ATP-binding protein of amino acid ABC transporter.
 0.999
cce_2268
Extracellular solute-binding protein, family 3; Belongs to the bacterial solute-binding protein 3 family.
 
 0.978
cce_2270
Amino acid ABC transporter permease protein, His/Glu/Gln/Arg/opine.
 
 
0.932
cce_2450
Putative extracellular solute-binding protein, family 3.
 
 
 0.842
glnH
Glutamine-binding protein of glutamine ABC transporter; Belongs to the bacterial solute-binding protein 3 family.
 
 
 0.839
cce_2797
Extracellular solute-binding protein, family 3.
 
 
 0.805
cce_0313
Putative extracellular solute-binding protein, family 3.
 
 
 0.553
cce_1370
Putative extracellular solute-binding protein, family 3 precursor.
 
 
 0.541
glsF
Ferredoxin-dependent glutamate synthase.
  
  
 0.538
cce_4126
Conserved hypothetical protein.
       0.518
Your Current Organism:
Crocosphaera subtropica
NCBI taxonomy Id: 43989
Other names: C. subtropica ATCC 51142, Crocosphaera subtropica ATCC 51142, Cyanothece sp. ATCC 51142, Cyanothece sp. BH68, Cyanothece sp. BH68K
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