STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cce_4134Hypothetical protein; Contains a Lipase, class 2 domain. (214 aa)    
Predicted Functional Partners:
cce_2762
Unknown; Contains a lipase, class 3 domain.
     
 0.915
dgkA
Diacylglycerol kinase.
     
 0.912
cce_3237
Glycosyl transferase, family 2.
   
 
  0.900
fadD
Probable long-chain-fatty-acid CoA ligase.
   
 
 0.846
cce_4133
Unknown.
       0.773
cce_4135
Unknown; Contains a hydratase/decarboxylase domain.
       0.757
rpl27
50S ribosomal protein L27; Belongs to the bacterial ribosomal protein bL27 family.
   
   0.676
rpl7
50S ribosomal protein L7/L12; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. Is thus essential for accurate translation; Belongs to the bacterial ribosomal protein bL12 family.
   
   0.675
rpl28
50S ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family.
    
   0.672
cce_0173
Putative methionine sulfoxide reductase B.
    
   0.672
Your Current Organism:
Crocosphaera subtropica
NCBI taxonomy Id: 43989
Other names: C. subtropica ATCC 51142, Crocosphaera subtropica ATCC 51142, Cyanothece sp. ATCC 51142, Cyanothece sp. BH68, Cyanothece sp. BH68K
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.