STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cce_4141Conserved hypothetical protein. (156 aa)    
Predicted Functional Partners:
sigG
Group 4 sigma-70 RNA polymerase sigma factor G; Belongs to the sigma-70 factor family. ECF subfamily.
 
 
 0.954
sigH
Group 4 sigma-70 RNA polymerase sigma factor H; Belongs to the sigma-70 factor family. ECF subfamily.
  
 
 0.882
cce_4144
Unknown; Contains a Like-Sm ribonucleoprotein-related protein core domain.
 
   
 0.777
cce_3998
Unknown.
  
     0.775
cce_4179
Unknown.
  
     0.773
cce_3226
Conserved hypothetical protein.
  
     0.772
cce_4197
Hypothetical protein.
  
     0.772
cce_3627
DUF1257-containing protein.
  
     0.770
cce_1048
Hypothetical protein; Contains a Mo-dependent nitrogenase, C-terminal domain.
  
     0.766
cce_0270
Unknown.
  
     0.765
Your Current Organism:
Crocosphaera subtropica
NCBI taxonomy Id: 43989
Other names: C. subtropica ATCC 51142, Crocosphaera subtropica ATCC 51142, Cyanothece sp. ATCC 51142, Cyanothece sp. BH68, Cyanothece sp. BH68K
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.