STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cce_4148Unknown. (88 aa)    
Predicted Functional Partners:
cce_0506
Unknown.
  
     0.669
cce_2493
Contains a DNA repair protein RadC fragment.
  
     0.656
cce_2740
Conserved hypothetical protein.
  
     0.646
cce_1927
Conserved hypothetical protein.
  
     0.631
cce_4149
Hypothetical protein; Contains a methyltransferase type 11 domain.
       0.625
cce_4150
Conserved hypothetical protein.
       0.625
bioF
8-amino-7-oxononanoate synthase; Catalyzes the decarboxylative condensation of pimeloyl-[acyl- carrier protein] and L-alanine to produce 8-amino-7-oxononanoate (AON), [acyl-carrier protein], and carbon dioxide.
       0.625
cce_2716
Unknown.
  
     0.599
cce_3564
Unknown.
  
     0.576
cce_1472
Hypothetical protein; Contains a DnaJ N-terminal four helical 'J' domain.
  
     0.573
Your Current Organism:
Crocosphaera subtropica
NCBI taxonomy Id: 43989
Other names: C. subtropica ATCC 51142, Crocosphaera subtropica ATCC 51142, Cyanothece sp. ATCC 51142, Cyanothece sp. BH68, Cyanothece sp. BH68K
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.