Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
cce_4199ATP-binding protein of ABC transporter. (804 aa)    
Predicted Functional Partners:
cce_4099
Hypothetical protein; Contains a YcaO_like domain.
  
  
 0.708
cce_3078
Polyketide synthase.
  
 
 0.706
cce_3079
Probable polyketide synthase.
  
 
 0.695
cce_5005
Hypothetical protein; Contains Helicase, C-terminal, Type III restriction enzyme, res subunit and DEAD/DEAH box helicase, N-terminal domains.
  
 
 0.689
pknA
Serine/threonine kinase.
  
 
 0.651
cce_3080
Polyketide synthase type I.
  
 
 0.640
cce_1643
Probable nitroreductase.
  
  
 0.626
cce_1804
Unknown.
  
  
 0.626
cce_2768
Probable nitroreductase.
  
  
 0.626
cce_4554
Unknown; Contains a nitroreductase domain.
  
  
 0.626
Your Current Organism:
Crocosphaera subtropica
NCBI taxonomy Id: 43989
Other names: C. subtropica ATCC 51142, Crocosphaera subtropica ATCC 51142, Cyanothece sp. ATCC 51142, Cyanothece sp. BH68, Cyanothece sp. BH68K
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