STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cce_4199ATP-binding protein of ABC transporter. (804 aa)    
Predicted Functional Partners:
cce_4099
Hypothetical protein; Contains a YcaO_like domain.
  
  
 0.779
cce_0161
Putative membrane protein.
  
 
 0.729
cce_3642
Putative ABC-2 type transport system permease protein.
  
 
 0.729
cce_3078
Polyketide synthase.
  
 
 0.711
cce_3079
Probable polyketide synthase.
  
 
 0.699
cce_1643
Probable nitroreductase.
  
  
 0.698
cce_1804
Unknown.
  
  
 0.698
cce_2768
Probable nitroreductase.
  
  
 0.698
cce_4554
Unknown; Contains a nitroreductase domain.
  
  
 0.698
cce_2192
Putative HlyD-family secretion protein.
  
  
 0.697
Your Current Organism:
Crocosphaera subtropica
NCBI taxonomy Id: 43989
Other names: C. subtropica ATCC 51142, Crocosphaera subtropica ATCC 51142, Cyanothece sp. ATCC 51142, Cyanothece sp. BH68, Cyanothece sp. BH68K
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.