STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cce_4230Transposase. (121 aa)    
Predicted Functional Partners:
cce_4229
Transposase.
     0.929
cce_3851
Transposase.
 
     0.748
cce_0045
Transposase.
 
     0.742
cce_3804
Transposase.
 
     0.742
cce_3865
Transposase.
 
     0.742
cce_1492
Hypothetical protein.
  
     0.599
cce_4849
Conserved hypothetical protein.
  
     0.553
cce_4233
Hypothetical protein; Contains DUF820.
 
     0.417
cce_4231
Transposase.
       0.410
cce_3565
Conserved hypothetical protein.
  
     0.407
Your Current Organism:
Crocosphaera subtropica
NCBI taxonomy Id: 43989
Other names: C. subtropica ATCC 51142, Crocosphaera subtropica ATCC 51142, Cyanothece sp. ATCC 51142, Cyanothece sp. BH68, Cyanothece sp. BH68K
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.