STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
crtOZeta-carotene desaturase. (560 aa)    
Predicted Functional Partners:
cce_1173
Unknown.
  
 
 0.917
cce_2233
Putative amine oxidase.
    
 0.917
cce_3426
Unknown.
  
 
 0.917
crtR
Beta-carotene hydroxylase.
    
 0.908
crtB
Phytoene synthase.
 
  
 0.744
cce_4277
Putative saccharopine dehydrogenase.
 
     0.705
cce_1843
Putative terpenoid synthase.
  
  
 0.637
cce_4448
Probable alpha/beta hydrolase.
  
    0.582
cce_2220
Unknown; Contains FAD dependent oxidoreductase and Phytoene dehydrogenase-related domains.
  
     0.520
cce_4748
Hypothetical protein; Contains DUF422.
 
   
 0.512
Your Current Organism:
Crocosphaera subtropica
NCBI taxonomy Id: 43989
Other names: C. subtropica ATCC 51142, Crocosphaera subtropica ATCC 51142, Cyanothece sp. ATCC 51142, Cyanothece sp. BH68, Cyanothece sp. BH68K
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