STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ccmLCarbon dioxide concentrating mechanism protein. (101 aa)    
Predicted Functional Partners:
ccmK1
Carbon dioxide concentrating mechanism protein.
 
 
 
 0.996
ccmK2
Carbon dioxide concentrating mechanism protein.
 
 
 
 0.991
ccmO
Carbon dioxide concentrating mechanism protein.
 
 
 
 0.987
ccmK4
Carbon dioxide concentrating mechanism protein.
 
 
 
 0.973
ccmK3
Carbon dioxide concentrating mechanism protein.
 
 
 
 0.962
ccmM
Carbon dioxide concentrating mechanism protein.
   
 
 0.940
ccmN
Carbon dioxide concentrating mechanism protein.
   
 
 0.860
rbcL
Ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit; RuBisCO catalyzes two reactions: the carboxylation of D- ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate in the photorespiration process. Both reactions occur simultaneously and in competition at the same active site.
     
 0.738
rbcS
Ribulose bisphosphate carboxylase small subunit.
   
 
 0.721
rbcX
Chaperonin-like protein RbcX.
      
 0.710
Your Current Organism:
Crocosphaera subtropica
NCBI taxonomy Id: 43989
Other names: C. subtropica ATCC 51142, Crocosphaera subtropica ATCC 51142, Cyanothece sp. ATCC 51142, Cyanothece sp. BH68, Cyanothece sp. BH68K
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.